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    NAL1 Protein NARROW LEAF 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336986, updated on 3-Apr-2024

    Summary

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    Gene symbol
    NAL1
    Gene description
    Protein NARROW LEAF 1
    Locus tag
    OSNPB_040615000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GFP; SPIKE; qFLW4; LSCHL4; OsJ_16147
    Expression
    Ubiquitous expression in flower buds (RPKM 10.4), flowers (RPKM 9.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (31203502..31214734)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyrate transaminase 1, mitochondrial-like Neighboring gene myosin-10 Neighboring gene lecithin-cholesterol acyltransferase-like 4 Neighboring gene cysteine-rich and transmembrane domain-containing protein WIH2 Neighboring gene APO protein 1, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.). Lin L, et al. Biochem Biophys Res Commun, 2019 Aug 27. PMID 31272720
    2. Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice. Hirotsu N, et al. Sci Rep, 2017 Nov 21. PMID 29162918, Free PMC Article
    3. Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport. Qi J, et al. Plant Physiol, 2008 Aug. PMID 18562767, Free PMC Article
    4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. NAL1 regulates leaf shape by affecting cell expansion in rice.
      Title: Narrow leaf 1 (NAL1) regulates leaf shape by affecting cell expansion in rice (Oryza sativa L.).
    2. NAL1 allele does not increase whole-leaf photosynthesis but plays a role in regulating spatial and temporal trade-offs among traits at the whole-plant level.
      Title: Partial loss-of-function of NAL1 alters canopy photosynthesis by changing the contribution of upper and lower canopy leaves in rice.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein NARROW LEAF 1; uncharacterized protein LOC4336986
    Names
    LOC_Os04g52479
    Protein GREEN FOR PHOTOSYNTHESIS
    Protein QUANTITATIVE TRAIT LOCUS FOR FLAG LEAF WIDTH 4
    Protein SPIKELET NUMBER
    narrow leaf 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419864.1 → NP_001406793.1  protein NARROW LEAF 1

      Status: VALIDATED

      Source sequence(s)
      AP014960, EU093963
      UniProtKB/Swiss-Prot
      A0A0P0WF43, B4XT64, Q0JA57
      UniProtKB/TrEMBL
      A0A896WPH7

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      31203502..31214734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026024792.1 → XP_025880577.1  uncharacterized protein LOC4336986 isoform X5

    2. XM_026024785.1 → XP_025880570.1  uncharacterized protein LOC4336986 isoform X1

      UniProtKB/TrEMBL
      Q7XTS7

    3. XM_026024790.1 → XP_025880575.1  uncharacterized protein LOC4336986 isoform X3

      UniProtKB/TrEMBL
      Q7XTS7

    4. XM_026024788.1 → XP_025880573.1  uncharacterized protein LOC4336986 isoform X1

      UniProtKB/TrEMBL
      Q7XTS7

    5. XM_026024786.1 → XP_025880571.1  uncharacterized protein LOC4336986 isoform X1

      UniProtKB/TrEMBL
      Q7XTS7

    6. XM_026024789.1 → XP_025880574.1  uncharacterized protein LOC4336986 isoform X1

      UniProtKB/TrEMBL
      Q7XTS7

    7. XM_026024787.1 → XP_025880572.1  uncharacterized protein LOC4336986 isoform X1

      UniProtKB/TrEMBL
      Q7XTS7

    8. XM_015780368.2 → XP_015635854.1  uncharacterized protein LOC4336986 isoform X2

      UniProtKB/TrEMBL
      B4XT64
      Conserved Domains (1) summary
      cl21584
      Location:213 → 411
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...

    9. XM_026024791.1 → XP_025880576.1  uncharacterized protein LOC4336986 isoform X4

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B4XT64.1 GenPept UniProtKB/Swiss-Prot:B4XT64

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